Contemporary generation electronics are light-years ahead of their predecessors. Shearwater are brilliant compared with, say, a classic inspiration paddle.
New CCR divers (like me) could simply trust the electronics and let the unit get on with it.
However... I am working hard to develop my experience as quickly as possible; I don't have many years of diving ahead of me and it could end suddenly at any time. Therefore I want as much understanding of my equipment and my physiology, particularly my oxygen consumption rates. By having that as "muscle memory", i.e. subconscious understanding and reactions, I feel I will be able to progress more safely to the dives I want to do and have to do in the next couple of years.
Thus I'm exceedingly happy with manually running the unit which forces me to monitor and predict ahead how things are going. The controller system is acting as a safety belt; when it injects it means I've failed to monitor and manage correctly.
Automatic gearboxes -- aside from the expensive direct shift ones with their flappy paddles -- cause higher fuel consumption, especially the CVT variety. These gearboxes cannot predict that, for example, you're going to overtake and need to be in a lower gear now. OK, experience with older automatics was awful; foot down and wait for the system to work out what's happening. Also using the engine as a brake is standard with a manual transmission, but is more difficult on an auto unless you manually select gears.
Or put another way; the diver/driver has the brain. The systems only have a limited set of logic; anything outside of that and, oh, it's back to the driver/diver who's not done this for a while.
It's more of a philosophical thing
